Index

C

calculate_coding_capacity() (in module suvtk.features) calculate_proportion() (in module suvtk.co_occurrence)

create_correlation_matrix() (in module suvtk.co_occurrence) create_segment_list() (in module suvtk.co_occurrence)

D

doi_to_record_id() (in module suvtk.download_database)

download_file() (in module suvtk.download_database)

E

Exec() (in module suvtk.utils)

extract_gene_results() (in module suvtk.features)

F

fetch_record_metadata() (in module suvtk.download_database) find_orientation() (in module suvtk.features)

find_tar_file() (in module suvtk.download_database) format_commands() (suvtk.cli.FullHelpGroup method), [1] FullHelpGroup (class in suvtk.cli)

G

get_available_cpus() (in module suvtk.utils)

get_lineage() (in module suvtk.features)

L

list_commands() (suvtk.cli.FullHelpGroup method), [1]

load_genome_type_db() (in module suvtk.virus_info) load_segment_db() (in module suvtk.virus_info)

M

module suvtk suvtk.cli suvtk.co_occurrence suvtk.comments suvtk.download_database suvtk.features suvtk.gbk2tbl suvtk.table2asn suvtk.taxonomy suvtk.utils suvtk.virus_info

P

predict_orfs() (in module suvtk.features)

process_comments() (in module suvtk.table2asn)

R

run_segment_info() (in module suvtk.virus_info)

S

safe_read_csv() (in module suvtk.utils) save_ncbi_feature_tables() (in module suvtk.features) segment_correlation_matrix() (in module suvtk.co_occurrence) select_top_structure() (in module suvtk.features) suvtk module suvtk.cli module suvtk.co_occurrence module suvtk.comments module suvtk.download_database module

suvtk.features module suvtk.gbk2tbl module suvtk.table2asn module suvtk.taxonomy module suvtk.utils module suvtk.virus_info module

U

unpack_tar() (in module suvtk.download_database)

V

validate_translation_table() (in module suvtk.features)

W

write_feature_entries() (in module suvtk.features)

write_nucleotides() (in module suvtk.features) write_proteins() (in module suvtk.features)