suvtk

• suvtk package
  • Submodules
  • suvtk.cli module
    • cli.py
      • Classes
      • Functions
      • Commands
    • FullHelpGroup
      • FullHelpGroup.list_commands()
      • FullHelpGroup.format_commands()
      • FullHelpGroup.format_commands()
      • FullHelpGroup.list_commands()
  • suvtk.co_occurrence module
    • co_occurrence.py
      • Functions
    • calculate_proportion()
    • create_correlation_matrix()
    • create_segment_list()
    • segment_correlation_matrix()
  • suvtk.comments module
    • comments.py
      • Functions
  • suvtk.download_database module
    • download_database.py
      • Functions
    • doi_to_record_id()
    • download_file()
    • fetch_record_metadata()
    • find_tar_file()
    • unpack_tar()
  • suvtk.features module
    • features.py
      • Functions
    • calculate_coding_capacity()
    • extract_gene_results()
    • find_orientation()
    • get_lineage()
    • predict_orfs()
    • save_ncbi_feature_tables()
    • select_top_structure()
    • validate_translation_table()
    • write_feature_entries()
    • write_nucleotides()
    • write_proteins()
  • suvtk.gbk2tbl module
    • Inputs
    • Outputs
    • Development notes
  • suvtk.table2asn module
    • table2asn.py
      • Functions
    • process_comments()
  • suvtk.taxonomy module
    • taxonomy.py
      • Functions
  • suvtk.utils module
    • utils.py
      • Functions
    • Exec()
    • get_available_cpus()
    • safe_read_csv()
  • suvtk.virus_info module
    • virus_info.py
      • Functions
    • load_genome_type_db()
    • load_segment_db()
    • run_segment_info()
  • Module contents